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Substitution matrix
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#	Item
31	"Selecting the Right Similarity-Scoring Matrix". In: Current Protocols in Bioinformatics Add to Reading List Source URL: faculty.virginia.edu Language: English - Date: 2014-05-12 09:11:44 Science Sequence alignment BLOSUM Smith–Waterman algorithm FASTA BLAST Substitution model Matrix Nucleic acid sequence Bioinformatics Computational phylogenetics Biology
32	Course Substitution/Waiver Policy Three classifications of course substitutions may be approved: 1) external substitutions from outside the state transfer matrix system, 2) external substitutions from within the state Add to Reading List Source URL: www.nwosu.edu Language: English - Date: 2011-03-03 11:07:55 Syllabus Substitution Curricula Legal procedure Education
33	Flexible sequence similarity searching with the FASTA3 program package William R. Pearson Department of Biochemistry, Add to Reading List Source URL: faculty.virginia.edu Language: English - Date: 1998-09-14 11:00:38 Computational science FASTA BLAST Sequence alignment Sequence database Sequence analysis Smith–Waterman algorithm Substitution matrix Warren Gish Bioinformatics Science Computational phylogenetics
34	Package ‘bios2mds’ July 2, 2014 Title From BIOlogical Sequences to MultiDimensional Scaling Version[removed]Date[removed]Author Julien Pele with Jean-Michel Becu, Herve Abdi, and Marie Chabbert Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-02 11:21:40 Biology FASTA format FASTA Sequence alignment Multiple sequence alignment G protein-coupled receptor BLAST STING Substitution matrix Bioinformatics Science Computational phylogenetics
35	Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis Add to Reading List Source URL: molevol.cmima.csic.es Language: English - Date: 2008-08-20 11:05:11 Biology Genetics Sequence alignment BLOSUM Substitution matrix Phylogenetic tree Conserved sequence Phylo Nucleic acid sequence Bioinformatics Computational phylogenetics Science
36	Amino Acid Substitution Scores Consider the problem of scoring a region of an amino-acid alignment that contains no gaps, such as: GSAQVKGH GNPKVKAH Here we discuss standard ways of assigning a score to each amino acid p Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2002-10-31 14:08:53 Biology Matrices Genetics BLOSUM Point accepted mutation BLAST Substitution matrix Matrix Sequence alignment Bioinformatics Science Computational phylogenetics
37	Multiple Sequence Alignments Introduction The Questions Add to Reading List Source URL: www.tcoffee.org Language: English - Date: 2009-10-25 19:29:47 Biotechnology Sequence alignment Multiple sequence alignment Substitution matrix Threading BLOSUM PROSITE Bioinformatics Science Biostatistics
38	Package ‘peptider’ July 28, 2014 Type Package Title Evaluation of diversity in nucleotide libraries Version[removed]Date[removed] Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-28 08:49:04 Bioinformatics Peptide Scheme Substitution matrix Amino acid Genetic code DNA Biology Chemistry Biochemistry
39	Bootstrapping and Normalization for Enhanced Evaluations of Pairwise Sequence Comparison RICHARD E. GREEN AND STEVEN E. BRENNER Invited Paper The exponentially growing library of known protein sequences Add to Reading List Source URL: compbio.berkeley.edu Language: English - Date: 2003-05-09 16:26:45 Biology Sequence alignment FASTA Structural alignment Smith–Waterman algorithm BLAST Structural Classification of Proteins Protein family Substitution matrix Bioinformatics Science Computational phylogenetics
40	JOURNAL OF COMPUTATIONAL BIOLOGY Volume 17, Number 3, 2010 # Mary Ann Liebert, Inc. Pp. 561–580 DOI: [removed]cmb[removed] Add to Reading List Source URL: www.cs.arizona.edu Language: English - Date: 2010-06-02 18:55:08 Computational science Sequence alignment Multiple sequence alignment Substitution matrix Protein secondary structure Dynamic programming Structural alignment Smith–Waterman algorithm Bioinformatics Computational phylogenetics Science

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